In addition to the online applications, two stand-alone programs implementing the sequence verification and pathway analysis application are available for download. They should be run on a Pentium 3 or higher with at least 500MHz. Installation and program instructions are given in the manual. Also see the instructions for the online implementation for more details about the method.
Pathway AnalysisManual (PDF) Manual (HTML) Download (40.5 MB)
Cis-regulatory Sequence AnalysisManual (PDF) Manual (HTML)