Computational chemistry - research interests
Head of research group: Jan
M.L. Martin (a.k.a. Gershom)
Benchmark ab initio calculations: the right result for the right reason?
A long-standing research interest of our group consists in trying to push
ab initio methods to their absolute limit in terms of accuracy. This involves
such issues as: basis set convergence and extrapolation to the 1-particle
basis set limit, correction for higher-order correlation effects,
effect of inner-shell correlation,
scalar relativistic effects, and (for spectroscopic properties) the
study of rotational-vibrational anharmonicity. We are presently able, for
small polyatomic molecules, to predict molecular binding energies to an
acccuracy of 1 kJ/mol (0.24 kcal/mol) or better, geometries to within less
than 0.001 Å, and vibrational band origins to within about 1 cm-1.
Our development efforts have culminated in two more-or-less "black box"
computational thermochemistry protocols knows as W1 and W2 theory.
(Click here
for more details.)
Aside from applications which require this level of accuracy in their
own right (e.g. determination of fundamental thermochemical properties),
computed data of this quality are very helpful in assessing the accuracy
of less CPU-intensive methods and/or to assist in the parametrization of
methods that involve empirical parameters (e.g. a number of recent DFT
methods).
Some representative recent publications on this topic:
-
A. Daniel Boese, Mikhal Oren, Onur Atasoylu, Jan M. L. Martin, Mihály Kállay and Jürgen Gauss, "W3 theory: robust computational thermochemistry in the kJ/mol accuracy range", Journal of Chemical Physics
120, 4129-4141 (2004)
[Read in JCP Online; Supporting Information; Preprint at arXiv.org]
- Srinivasan Parthiban and Jan M. L. Martin,
``Assessment of W1 and W2 theories for the computation of
electron affinities, ionization potentials, heats of formation,
and proton affinities'', Journal of Chemical Physics 114,
6014-6029 (2001)
[Read in JCP Online; Supplementary
material]
- Jan M.L. Martin and Glênisson de Oliveira,
``Towards standard methods for benchmark quality ab initio thermochemistry - W1
and W2 theory'', Journal of Chemical Physics 111, 1843-1856 (1999) [article in APS Journals Online].
See also Chemical and Engineering News,
April 24, 2000.
- Jan M. L. Martin and Peter R. Taylor, ``A definitive heat of vaporization of silicon through benchmark ab initio calculations on SiF4'', Journal of Physical Chemistry A 103, 4427-4431 (1999) [article in ACS Journals Online].
- Jan M. L. Martin, "Basis set convergence study of the atomization
energy, geometry, and anharmonic force field of SO2. The importance
of inner polarization functions", Journal of Chemical Physics 108,
2791-2800 (1998)
[Article in JCP Online].
- Jan M. L. Martin, "Spectroscopic quality ab initio potential
curves for CH, NH, OH, and HF. A convergence study", Chemical Physics
Letters 292, 411-420 (1998)
[Article in CPL Online].
Computational modeling of homogenous catalysis: methodology and applications
In collaboration with the experimental group of Prof. David Milstein, we
are involved in the computational modeling of homogenous catalysis by late
transition metal complexes. We apply density functional techniques to elucidate
the mechanism of catalytic reactions, compare barrier heights of competing
reaction pathways, characterize reaction intermediates, compare relative
stabilities of various produtcs, predict spectra in order
to facilitate experimental identification, and otherwise assist the
experimental effort.
Examples of specific subjects include the mechanism of selective C-C vs.
C-H activation (and conversely) by means of `pincer ligand' catalysts,
activation of strong CN and NN bonds by same,
the mechanism of the Heck coupling, and
cooperativity in hydrogenation of acetone by catalytic monolayers.
The prediction of reaction barrier heights is
a known weakness of present-day density functional methods. Specialized 'kinetics'
functionals yield more reliable barrier heights, at the expense of severely
degraded performance for all other properties. We developed a novel hybrid meta-GGA
functional termed BMK (Boese-Martin for Kinetics), which has hybrid GGA performance
overall but yields reliable barrier heights as well.
As a side-project, we have become involved (with Dr. Milko E. van der Boom) in computational studies of an
intriguing class of molecules known as metallabenzenes.
Some representative recent publications on this topic:
-
A. Daniel Boese and Jan M. L. Martin,
"Development of Novel Density Functionals for Thermochemical Kinetics",
Journal of Chemical Physics, in press.
[Preprint at arXiv.org; Supporting Information]
- Mark A. Iron, Jan M. L. Martin, and M. E. van der Boom,
Cycloaddition Reactions of Metalloaromatic Complexes of Iridium and Rhodium: A Mechanistic DFT Investigation", Journal of the American Chemical
Society 125, 11702-11709 (2003) [Read in ACS Journals Online; Local Supporting Information; ACS Supporting Information]
- Mark A. Iron, Andreas Sundermann, and Jan M. L. Martin,
"Catalytic Reduction of Acetone by [(bpy)Rh]+: A Theoretical Mechanistic Investigation and
Insight into Cooperativity Effects in this System", Journal of the American Chemical Society 125, 11430-11441 (2003)
[Read in ACS Journals Online; Local Supporting Information; ACS Supporting Information]
-
Boris Rybtchinski, Stephan Oevers, Michael Montag, Arkadi Vigalok,
Haim Rozenberg, Jan M. L. Martin, and David Milstein,
``Comparison of Steric and Electronic Requirements for C-C and C-H Bond Activation.
Chelating vs Nonchelating Case'',
Journal of the American Chemical Society, 123, 9064-9077 (2001).
[Read in ACS Journals Online; Supplementary
material]
- Andreas Sundermann, Olivier Uzan, and Jan M. L. Martin,
``Computational study of a new Heck reaction mechanism
catalyzed by palladium(II/IV) species'',
Chemistry - A European Journal 7, 1703-1711 (2001)
[Read in Wiley Journals Online;
Supplementary
material]
- Nissan Ashkenazi, Arkadi Vigalok, Srinivasan Parthiban, Yehoshua Ben-David,
Linda J. W. Shimon, Jan M. L. Martin, and David Milstein,
``Discovery of the first metallaquinone'', Journal of the American
Chemical Society 122, 8797-8798 (2000) [read in ACS Journals Online; supplementary material]. See also Chemical and Engineering News, September 18, 2000..
- Andreas Sundermann, Olivier Uzan, David Milstein, and Jan M. L. Martin, "Selective CC vs CH activation by Rh(I) PCP pincer complexes. A computational study",
Journal of the American Chemical Society 122, 7095-7104 (2000)
[read in ACS Journals Online; supplementary material].
Other subjects
As by-products of the two above principal subjects, we are involved in
some ancillary research topics such as:
- development of correlation consistent valence basis set for
use with relativistic effective core potentials
-
assessment of DFT methods for description of weak molecular interactions and
molecular dynamics modeling of molecular liquids:
-
intershell correlation effects and breakdown of traditional core-valence
separation in metallic and metalloid elements.
-
prediction of accurate anharmonic force fields of small polyatomic molecules
-
study of silicon chemistry by ab initio and DFT methods
-
gas-phase ion chemistry by ab initio and DFT methods (collaboration with
Prof. Chava Lifshitz, Hebrew U., Jerusalem)
Some representative recent publications on these topics:
- Jan M. L. Martin and Andreas Sundermann,
``Correlation consistent valence basis sets for use with
the Stuttgart-Dresden-Bonn relativistic effective core potentials:
the atoms Ga-Kr and In-Xe'',
Journal of Chemical Physics 114, 3408-3420 (2001)
[Read in JCP Online; Supplementary
material]
- A. Daniel Boese, Amalendu Chandra,
Jan M. L. Martin, and
Dominik Marx, "From ab initio quantum chemical theory to molecular dynamics: the
delicate case of hydrogen bonding in ammonia", Journal of Chemical Physics 119, 5965 - 5980 (2003). [Read online; Supporting Information; Read preprint at arXiv.org]
- Mark A. Iron, Mikhal Oren and Jan M. L. Martin,
"Alkali and Alkaline Earth Metal Compounds: Core-Valence Basis Sets and
Importance of Subvalence Correlation",
Molecular Physics 101, 1345-1361 (2003) [W. G. Richards special
issue].
[Read online; Read online preprint; Supporting Information]
- Xiaogang Wang, Edwin L. Sibert III, and Jan M. L. Martin,
``Anharmonic force field and vibrational frequencies of
tetrafluoromethane (CF4) and tetrafluorosilane (SiF4)'',
Journal of Chemical Physics 112, 1353-1366 (2000)
[Read in AIP Journals Online;
supplementary material].
- Kim K. Baldridge, Olivier Uzan, and Jan M. L. Martin,
``The Silabenzenes: Structure, Properties, and Aromaticity'',
Organometallics 19, 1477-1487 (2000) [read in ACS Journals Online; Supplementary material]
- Lisa N. Heydorn, Yun Ling, Glenisson de Oliveira, Jan M. L. Martin,
Chava Lifshitz, and Johan K. Terlouw,
``Tautomerization and Dissociation of Dimethyl Phosphonate Ions (CH3O)2P(H)=O.+ : Theory and Experiment in Concert'', Zeitschrift für Physikalische
Chemie 215, 141-182 (2001)
[invited paper for Jürgen Troe Festschrift].
[Read online; Supplementary
material]
A full publication
list is available on our website.
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